RetrogeneDB ID: | retro_eeur_276 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_234759:122..362(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD5 | ||
Ensembl ID: | ENSEEUG00000001182 | ||
Aliases: | None | ||
Description: | programmed cell death 5 [Source:HGNC Symbol;Acc:8764] |
Percent Identity: | 70.24 % |
Parental protein coverage: | 66.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKT-KAVENYLIQMARYGQLSGKVSEQGLIEILEKV |
EAKH.....R.SI.AQVLDQS....LSNLALV.P....KAVEN.LIQMA.Y.QLSG..SEQG.IEILEKV | |
Retrocopy | EAKHMK---RSSIIAQVLDQSSQVWLSNLALVQPXXXXKAVENHLIQMAIYRQLSG*ISEQGFIEILEKV |
Parental | SQQTEKKTTVKFNR |
SQQ.EKK.TVK.NR | |
Retrocopy | SQQAEKK-TVKSNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 53 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .01 RPM |
SRP017611_liver | 0 .16 RPM | 28 .62 RPM |