RetrogeneDB ID: | retro_cfam_39 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:10737582..10738011(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000005615 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000013185 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.43 % |
Parental protein coverage: | 50.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LLSARGARASAGLPLGAEMPKKAGATNKGKSQEPERPPPSLGPVTVDPRGSVTIAIRAKPGSKQNAVTDV |
L...RGARASAGLPLGAEMPKKAG..NKGKSQEPERPPPSLGPVTV.PRGSVTIAIR.K.GSKQNAVT.V | |
Retrocopy | LMLGRGARASAGLPLGAEMPKKAGVMNKGKSQEPERPPPSLGPVTVEPRGSVTIAIRTKSGSKQNAVTNV |
Parental | TAEAVSVAIAAPPSEGEANAELCRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTTAEEILEKLKQQVE |
T.EA.SVAIAAPPSEGEANA.LC.YL.KVLELRKSDV.LDKG.KS.EKVV.LL.STTAEEILEKLKQQVE | |
Retrocopy | TTEAMSVAIAAPPSEGEANAKLCQYLPKVLELRKSDVILDKGDKSHEKVVRLLTSTTAEEILEKLKQQVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 16 .88 RPM |
SRP017611_brain | 0 .00 RPM | 13 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .03 RPM |
SRP017611_liver | 0 .00 RPM | 5 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016522 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013185 | 2 retrocopies |
retro_cfam_39 , retro_cfam_420,
|
Callithrix jacchus | ENSCJAG00000015877 | 2 retrocopies | |
Equus caballus | ENSECAG00000022459 | 1 retrocopy | |
Homo sapiens | ENSG00000169609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023062 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009564 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007515 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015890 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019374 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010930 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005072 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016446 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006737 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019514 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006314 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017947 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000030131 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014387 | 6 retrocopies |