RetrogeneDB ID: | retro_mmul_664 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214089697:4693..5064(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C7H15orf40 | ||
Ensembl ID: | ENSMMUG00000015890 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.22 % |
Parental protein coverage: | 97.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPKKAGATTKASSSQSKEPERPFPPLGPVAVDPKGCVTITIHAKPGSKQNAVTDLTAEAVNVAIA-APPS |
M..KAGA.TK..S.Q..EPER..PPLGP.AV...GCVTI.IHAKPGSKQN..TDLTAEAV.VAIA.APP. | |
Retrocopy | MQRKAGAMTKGKS-QIQEPERSLPPLGPMAVVSEGCVTIAIHAKPGSKQNTATDLTAEAVHVAIA>APPL |
Parental | EGEANAEL-CRYLSKVLELRKSDVVLDKGGKSREKVVKLLASTTPEEILEKLKKEA |
E.E..AEL...YLSKVLELRKSDVVLDKGG.S.EKVVKLLAST..E.IL.K..K.A | |
Retrocopy | EREDDAEL>TAYLSKVLELRKSDVVLDKGGTSHEKVVKLLASTNLEGILRKFTKKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .80 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .08 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .42 RPM |
SRP007412_heart | 0 .00 RPM | 1 .53 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .76 RPM |
SRP007412_liver | 0 .00 RPM | 1 .98 RPM |
SRP007412_testis | 0 .00 RPM | 1 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016522 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013185 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015877 | 2 retrocopies | |
Equus caballus | ENSECAG00000022459 | 1 retrocopy | |
Homo sapiens | ENSG00000169609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023062 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009564 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007515 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015890 | 1 retrocopy |
retro_mmul_664 ,
|
Monodelphis domestica | ENSMODG00000019374 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010930 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005072 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016446 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006737 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019514 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006314 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017947 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000030131 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014387 | 6 retrocopies |