RetrogeneDB ID: | retro_ecab_374 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 16:31521616..31521941(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000006014 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000022459 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.98 % |
Parental protein coverage: | 93.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GKSESKKPETSLPPLGPVAADPKGCVTIAIHAKPGSKQNAVTDVTAEAV-SVAIAAPPSEGEANAELCRY |
G.S..K..ETSLPPLGPVAADPKGCVT.AI.AKPGSKQ.AV.D.TA.AV.SVAIAAPP.EGEA.AELC.Y | |
Retrocopy | GQSQRKEAETSLPPLGPVAADPKGCVTMAICAKPGSKQSAVRDLTAKAV>SVAIAAPPWEGEADAELCQY |
Parental | LSKVLDLRKSDVVLDKGGKSREKVVKLLASTTPDEILEK |
LSKVL.LR.SDV.L.KGGKS.EKVVKLLAS.TP...LEK | |
Retrocopy | LSKVLELRESDVFLAKGGKSCEKVVKLLASPTPEDVLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .30 RPM | 8 .62 RPM |
SRP021940_cerebellum | 0 .00 RPM | 19 .99 RPM |
SRP021940_embryo | 0 .08 RPM | 14 .50 RPM |
SRP021940_placental_villous | 0 .10 RPM | 17 .32 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 18 .28 RPM |
SRP021940_testis | 0 .00 RPM | 11 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016522 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013185 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015877 | 2 retrocopies | |
Equus caballus | ENSECAG00000022459 | 1 retrocopy |
retro_ecab_374 ,
|
Homo sapiens | ENSG00000169609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023062 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009564 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007515 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015890 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019374 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010930 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005072 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016446 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006737 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019514 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006314 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017947 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000030131 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014387 | 6 retrocopies |