RetrogeneDB ID:

retro_mmur_1601

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_9050:475..799(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C15orf40
Ensembl ID:ENSMICG00000009564
Aliases:None
Description:chromosome 15 open reading frame 40 [Source:HGNC Symbol;Acc:28443]


Retrocopy-Parental alignment summary:






>retro_mmur_1601
CAGAACAAGGAACCAGAGAGACCACTTCCTCCCTTAGCTCCTGTGGCTGTTGATCCTAAAGGTTGTGTCACCATAGCCAT
CCATGCCAAACCTGGCTCCAAACAAAACGCCATAACAGATTGGACAGCAGAAGCCCTAAGCGTAGCTATTGCGGCACCTC
CGTCGGAGGGAGAGGCCAATGCCGAGCTCTGTCGGTATCTTTCCAAGGTCTTAGAACTCAGGAAGAGTGATGTGGTTTTG
GATGAGGGTGGTAAATCTCGTGAAAAGGTGGTGAAACTTTTGGCCTCCACAACTCCAGAAGAGATCTTGGAGGAGTTATA
AAAA

ORF - retro_mmur_1601 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.37 %
Parental protein coverage: 97.3 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQNKEPERPLPPLAPVAVDPKGCVTIAIHAKPGSKQNAITDLTAEAVSVAIAAPPSEGEANAELCRYLSKV
QNKEPERPLPPLAPVAVDPKGCVTIAIHAKPGSKQNAITD.TAEA.SVAIAAPPSEGEANAELCRYLSKV
RetrocopyQNKEPERPLPPLAPVAVDPKGCVTIAIHAKPGSKQNAITDWTAEALSVAIAAPPSEGEANAELCRYLSKV
ParentalLELRKSDVVLDKGGKSREKVVKLLASTTPEEILEKLKK
LELRKSDVVLD.GGKSREKVVKLLASTTPEEILE.L.K
RetrocopyLELRKSDVVLDEGGKSREKVVKLLASTTPEEILEEL*K

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1601 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1601 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000165222 retrocopies
Canis familiaris ENSCAFG000000131852 retrocopies
Callithrix jacchus ENSCJAG000000158772 retrocopies
Equus caballus ENSECAG000000224591 retrocopy
Homo sapiens ENSG000001696091 retrocopy
Gorilla gorilla ENSGGOG000000230621 retrocopy
Microcebus murinus ENSMICG00000009564 2 retrocopies
retro_mmur_1387, retro_mmur_1601 ,
Myotis lucifugus ENSMLUG000000075151 retrocopy
Macaca mulatta ENSMMUG000000158901 retrocopy
Monodelphis domestica ENSMODG000000193741 retrocopy
Nomascus leucogenys ENSNLEG000000109301 retrocopy
Oryctolagus cuniculus ENSOCUG000000050721 retrocopy
Procavia capensis ENSPCAG000000164461 retrocopy
Pongo abelii ENSPPYG000000067371 retrocopy
Rattus norvegicus ENSRNOG000000195142 retrocopies
Sorex araneus ENSSARG000000063141 retrocopy
Sarcophilus harrisii ENSSHAG000000179472 retrocopies
Sus scrofa ENSSSCG000000301311 retrocopy
Tupaia belangeri ENSTBEG000000143876 retrocopies



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