RetrogeneDB ID: | retro_shar_233 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834723.1:2090442..2090776(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C15orf40 | ||
Ensembl ID: | ENSSHAG00000017947 | ||
Aliases: | None | ||
Description: | chromosome 15 open reading frame 40 [Source:HGNC Symbol;Acc:28443] |
Percent Identity: | 71.93 % |
Parental protein coverage: | 88.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KGKGQTKEPVKPLPP-TGPVAVDQNGSITIAIHAKPGSKQNAITDVTTENVSVAIAAPPSEGEANAELCR |
K.K.Q.KEPVKPLPP.T.PVAVDQ.GSIT.AI.AK.G.KQNA..DVT.EN..VA.A.PPSEG.ANA.LC. | |
Retrocopy | KEKDQNKEPVKPLPP<TRPVAVDQSGSITVAILAKHGFKQNAKKDVTVENIRVASASPPSEGKANADLCQ |
Parental | YLSKVLELRKSDV-ILDKGGKSREKVVKILASITPEEILEKLKR |
.LSK.LE..KSD..ILDKGGKS..K.VKIL...TPEEILEKLKR | |
Retrocopy | HLSKDLEFNKSDL<ILDKGGKS*GKMVKILTPTTPEEILEKLKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016522 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013185 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015877 | 2 retrocopies | |
Equus caballus | ENSECAG00000022459 | 1 retrocopy | |
Homo sapiens | ENSG00000169609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023062 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009564 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007515 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015890 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019374 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010930 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005072 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016446 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006737 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019514 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006314 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017947 | 2 retrocopies |
retro_shar_233 , retro_shar_442,
|
Sus scrofa | ENSSSCG00000030131 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014387 | 6 retrocopies |