RetrogeneDB ID: | retro_hsap_1881 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:39398926..39399385(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000225253 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C15orf40 | ||
Ensembl ID: | ENSG00000169609 | ||
Aliases: | None | ||
Description: | chromosome 15 open reading frame 40 [Source:HGNC Symbol;Acc:28443] |
Percent Identity: | 76.43 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MLRLRSGLRHL-RATPNTRGSARL-LCAEMP-KKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAI |
ML.L.SGL..L.RA...T..S.RL.L...MP.KKA.A.T.GKSQ.KEPERPLPPLGPVAV.P.GCVTIAI | |
Retrocopy | MLGLGSGLKQL>RAALSTQDSTRLPLGTKMP<KKADAMT*GKSQIKEPERPLPPLGPVAVVPIGCVTIAI |
Parental | HAKPGSKQNAVTDLTAEAVNVAIAAPPSEGEANAELC-RYLSKVLELRKSDVVLDKGGKS-REKVVKLLA |
HAKPGSKQN.VTDLTA..VNVAIAAPPS.GE.NAELC..YLSKVLELRKSDVVLD.GG.S..EKVVKLLA | |
Retrocopy | HAKPGSKQNTVTDLTAQLVNVAIAAPPSVGEDNAELC>AYLSKVLELRKSDVVLDTGGTS<AEKVVKLLA |
Parental | STTPEEILEKLKKEAKK |
STTPEEIL.K.KK.A.K | |
Retrocopy | STTPEEILRKFKKKAEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 7 .45 RPM |
bodymap2_adrenal | 0 .00 RPM | 15 .15 RPM |
bodymap2_brain | 0 .00 RPM | 8 .88 RPM |
bodymap2_breast | 0 .00 RPM | 8 .91 RPM |
bodymap2_colon | 0 .00 RPM | 5 .41 RPM |
bodymap2_heart | 0 .00 RPM | 3 .45 RPM |
bodymap2_kidney | 0 .00 RPM | 10 .84 RPM |
bodymap2_liver | 0 .00 RPM | 4 .75 RPM |
bodymap2_lung | 0 .00 RPM | 5 .47 RPM |
bodymap2_lymph_node | 0 .00 RPM | 8 .15 RPM |
bodymap2_ovary | 0 .00 RPM | 10 .85 RPM |
bodymap2_prostate | 0 .00 RPM | 10 .96 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 4 .26 RPM |
bodymap2_testis | 0 .04 RPM | 11 .14 RPM |
bodymap2_thyroid | 0 .00 RPM | 15 .86 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 7 .17 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1378 |
Pongo abelii | retro_pabe_1561 |
Callithrix jacchus | retro_cjac_1108 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016522 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013185 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015877 | 2 retrocopies | |
Equus caballus | ENSECAG00000022459 | 1 retrocopy | |
Homo sapiens | ENSG00000169609 | 1 retrocopy |
retro_hsap_1881 ,
|
Gorilla gorilla | ENSGGOG00000023062 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009564 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007515 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015890 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019374 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010930 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005072 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016446 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006737 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019514 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006314 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017947 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000030131 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014387 | 6 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .00 RPM |