RetrogeneDB ID: | retro_btau_1724 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | GJ059955.1:12265..12571(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C21H15ORF40 | ||
Ensembl ID: | ENSBTAG00000016522 | ||
Aliases: | C21H15orf40, C15orf40 | ||
Description: | UPF0235 protein C15orf40 homolog [Source:RefSeq peptide;Acc:NP_001068854] |
Percent Identity: | 79.41 % |
Parental protein coverage: | 77.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LPPLGPVTVDPKGGVSIAIHAKPGSKQNAVTDVTTEAVSVAIAAPPTEGEANAELCRYLSKVLELRKSDV |
LP.LGP..V.PKGG...AIH.K.GSKQNA.TDVTTEAVSV.IA.PP.EGEAN.ELC..LSK.LELR.SDV | |
Retrocopy | LPTLGPEAVYPKGGFTMAIHDKAGSKQNAMTDVTTEAVSVGIAGPPIEGEANVELCCCLSKILELRTSDV |
Parental | VLDKGGKSREKVVKLLASTPPEEILEKLKKQV |
VLDKG.KS.EKVVKLLA.TPPEEILEKLKKQV | |
Retrocopy | VLDKGSKSHEKVVKLLACTPPEEILEKLKKQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 12 .47 RPM |
ERP005899_muscle | 0 .00 RPM | 8 .97 RPM |
SRP017611_brain | 0 .00 RPM | 12 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .38 RPM |
SRP017611_liver | 0 .00 RPM | 7 .78 RPM |
SRP030211_testis | 0 .00 RPM | 15 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016522 | 2 retrocopies |
retro_btau_1724 , retro_btau_485,
|
Canis familiaris | ENSCAFG00000013185 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015877 | 2 retrocopies | |
Equus caballus | ENSECAG00000022459 | 1 retrocopy | |
Homo sapiens | ENSG00000169609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023062 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009564 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007515 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015890 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019374 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010930 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005072 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016446 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006737 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019514 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006314 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017947 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000030131 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014387 | 6 retrocopies |