RetrogeneDB ID: | retro_chof_1984 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_443705:21..548(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GRPEL2 | ||
Ensembl ID: | ENSCHOG00000004070 | ||
Aliases: | None | ||
Description: | GrpE-like 2, mitochondrial (E. coli) [Source:HGNC Symbol;Acc:21060] |
Percent Identity: | 81.36 % |
Parental protein coverage: | 78.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PPDELGP-SLAERALRLKAIKLEKEVQDLTVRCQRAVADAENIRRRTQRCVEDAKIFGIQSFCKDLVEVA |
PPDELG...LAE...RLKA.KLEKEVQ.LTVR.QRAVAD.EN.R...QRC..DAKIFGIQSFCKDLVEV. | |
Retrocopy | PPDELGQ<TLAEQTFRLKASKLEKEVQGLTVRWQRAVADSENLRTQIQRCLDDAKIFGIQSFCKDLVEVV |
Parental | DILEKTTEYISGEREPGDQKLTLEKVFQGLSLLEAKLKSVFAKHGLEKMTPIGDKYDPHEHELICHVPAG |
..LEKTTEY.SGE.EPGDQKL.LEKVFQGLSLLEAKLKS.FAKHGLEKMTPIGDKYD..E.EL.CH.PAG | |
Retrocopy | NVLEKTTEYNSGEKEPGDQKLSLEKVFQGLSLLEAKLKSMFAKHGLEKMTPIGDKYDL*EQELTCHMPAG |
Parental | IGVQPGTVALVRQDGYKLHGRTIRLAQVEVAVESQRR |
.GVQPGTVALVRQ.GYKLHG.TIRLAQVEVA.E.QRR | |
Retrocopy | GGVQPGTVALVRQNGYKLHGCTIRLAQVEVAAEFQRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004070 | 1 retrocopy |
retro_chof_1984 ,
|
Dipodomys ordii | ENSDORG00000011142 | 1 retrocopy | |
Felis catus | ENSFCAG00000003624 | 1 retrocopy | |
Homo sapiens | ENSG00000164284 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005410 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021662 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010160 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016138 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014326 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017396 | 2 retrocopies | |
Sorex araneus | ENSSARG00000005467 | 2 retrocopies |