RetrogeneDB ID: | retro_dord_353 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_13462:16990..17665(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Grpel2 | ||
Ensembl ID: | ENSDORG00000011142 | ||
Aliases: | None | ||
Description: | GrpE-like 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1334416] |
Percent Identity: | 96.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAARSLWAVRRRVQRLLASCIPPDSREWLPPFSTATQRNAGEDCSSEDPPVDRGPSLAEQALRLKAVKLE |
M..RSLWAVRRRVQRLLAS.I.PDSREWLPPFSTATQRNAGEDCSSEDPPVD.GPSLAEQALRLKAVKLE | |
Retrocopy | MTSRSLWAVRRRVQRLLASSILPDSREWLPPFSTATQRNAGEDCSSEDPPVDHGPSLAEQALRLKAVKLE |
Parental | KEVQDLTLRYQRAVADCENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILENTTKCISEEVDPEDQKLTL |
KEVQDLTLRYQRAVADC.NIRRRTQRCVEDAKIFGIQSFCKDLVEVADILENTTKCISEEVDPEDQKLTL | |
Retrocopy | KEVQDLTLRYQRAVADCKNIRRRTQRCVEDAKIFGIQSFCKDLVEVADILENTTKCISEEVDPEDQKLTL |
Parental | EKVFRGLSLLEAKLKSVFTKHGLEKMAPIGDKYDPHEHELICHVPAGIGVQPGTVALVRHDGYKLHGRTI |
EKVFRGLSLLEAKLKSVFTKHGLEKMAPIGDKYDPHEHELICH.PAGIGVQP.TVALVRHDGYKLHGRTI | |
Retrocopy | EKVFRGLSLLEAKLKSVFTKHGLEKMAPIGDKYDPHEHELICHIPAGIGVQPCTVALVRHDGYKLHGRTI |
Parental | RLAQVEVAVESQRRL |
RLAQVEVAVESQRRL | |
Retrocopy | RLAQVEVAVESQRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004070 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011142 | 1 retrocopy |
retro_dord_353 ,
|
Felis catus | ENSFCAG00000003624 | 1 retrocopy | |
Homo sapiens | ENSG00000164284 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005410 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021662 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010160 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016138 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014326 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015933 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017396 | 2 retrocopies | |
Sorex araneus | ENSSARG00000005467 | 2 retrocopies |