RetrogeneDB ID:

retro_sara_320

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:scaffold_162197:20059..20420(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GRPEL2
Ensembl ID:ENSSARG00000005467
Aliases:None
Description:GrpE-like 2, mitochondrial (E. coli) [Source:HGNC Symbol;Acc:21060]


Retrocopy-Parental alignment summary:






>retro_sara_320
GTCAGGAGGCAGCTGGCCTCGGGTGCACAGCACAGCGGCAGAGCTTGGCTGCACCCTTTCAGCACCGCCATCCAGTGAAC
CACCGATGAGGACTGCAGTTCGGAAGACCCTCCTGATGATCTTGGTCCTGCTCTTGCATAATGAGCCTTAAAGCTAAAAG
CTGTTAAGCTGGAGAAGGAAGTGCAGGATTTGATAATAAAATACCAGAGAGATGTAGCTGATGAGTAAAACATCAGAAGG
CGAACCCAGAGATGTGTGGAGGATGCCAAGATATTTGGAATTCAGAGTTTCTGTAAGGACTTCTGTGGAGGTGGCAGACA
CTTTGGAGAAGACAGCAGAGTGCCTTTCTGCAGAAGTAGAC

ORF - retro_sara_320 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.82 %
Parental protein coverage: 53.33 %
Number of stop codons detected: 4
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLRRLLASGARSGGRAWLHPFSTATQRTAGEDCSSEDPPDELGPSLAERALKLKAVKLEKEVQDLTIKYQR
.RR.LASGA...GRAWLHPFSTA.Q.T..EDCSSEDPPD.LGP.LA..ALKLKAVKLEKEVQDL.IKYQR
RetrocopyVRRQLASGAQHSGRAWLHPFSTAIQ*TTDEDCSSEDPPDDLGPALA**ALKLKAVKLEKEVQDLIIKYQR
ParentalAVADGENIRRRTQRCVEDAKIFGIQSFCKDL-VEVADLLEKTAECLSAEAE
.VAD..NIRRRTQRCVEDAKIFGIQSFCKD..VEVAD.LEKTAECLSAE..
RetrocopyDVADE*NIRRRTQRCVEDAKIFGIQSFCKDF>VEVADTLEKTAECLSAEVD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_320 was not experimentally validated.

Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 19 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000040701 retrocopy
Dipodomys ordii ENSDORG000000111421 retrocopy
Felis catus ENSFCAG000000036241 retrocopy
Homo sapiens ENSG000001642842 retrocopies
Gorilla gorilla ENSGGOG000000054102 retrocopies
Macaca mulatta ENSMMUG000000216621 retrocopy
Nomascus leucogenys ENSNLEG000000101601 retrocopy
Oryctolagus cuniculus ENSOCUG000000161383 retrocopies
Otolemur garnettii ENSOGAG000000143261 retrocopy
Pongo abelii ENSPPYG000000159332 retrocopies
Pan troglodytes ENSPTRG000000173962 retrocopies
Sorex araneus ENSSARG00000005467 2 retrocopies
retro_sara_320 , retro_sara_511,



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