RetrogeneDB ID: | retro_chof_2621 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_91707:2103..2785(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000004467 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.83 % |
Parental protein coverage: | 65.9 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | NIISK-EKKEIKWIGLP-TNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQAEQQA |
NIISK.EKKEIKWI....TNSAQE.QNLEVER.RRLERIKQKQSQLQELILQQIAFKNLVQRN..A.QQA | |
Retrocopy | NIISK>EKKEIKWICIL>TNSAQESQNLEVERKRRLERIKQKQSQLQELILQQIAFKNLVQRNSKAKQQA |
Parental | NRPPPSNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVL-KRMGMACGLESGSCSA |
N..PPSNSVIHLPFI...TSKKTVIDC.IS.DKFEYLFNFDNTFEIHDDIEVL.K..GMACGLESGSC.A | |
Retrocopy | NQLPPSNSVIHLPFI---TSKKTVIDCGISKDKFEYLFNFDNTFEIHDDIEVL<K*TGMACGLESGSCLA |
Parental | D--LMARSLVPKALEPYVTXXXXXXXXXXXXTSSGSTSNGTRLSASDLTNGADGTLATSSSGSQYSGSRV |
....MARS.V.KALEPYVT............TSSGSTSN.T.LSASDLTNGADGTLATS.SGSQYSGSRV | |
Retrocopy | EDLKMARSFVHKALEPYVTEMAQGSISSVFVTSSGSTSNDTTLSASDLTNGADGTLATSASGSQYSGSRV |
Parental | ETPVSYVGEDDDDDDDFNENDDE |
ETPVSYVGED.DDDD.F.END.. | |
Retrocopy | ETPVSYVGEDNDDDDNFSENDED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004467 | 8 retrocopies |
retro_chof_2187, retro_chof_2229, retro_chof_2621 , retro_chof_506, retro_chof_529, retro_chof_837, retro_chof_854, retro_chof_895,
|
Callithrix jacchus | ENSCJAG00000006950 | 2 retrocopies | |
Homo sapiens | ENSG00000198176 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000004908 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000007927 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012165 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007423 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038482 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000849 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003532 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025889 | 3 retrocopies |