RetrogeneDB ID: | retro_chof_529 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_118792:23..1010(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000004467 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.58 % |
Parental protein coverage: | 94.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VIGTPQRPAAPNTILVGSPHTPNTHFVSQNQASDSSPWSAGKRNRKGEKNGKGLRHFSMKVCEKVQRKGT |
VIGTPQRPAAPNTILVGSPHTPNTHFVSQNQASDSSPWSAGK.NRKGEKNGKGLRHFS.KVCEKVQRKG. | |
Retrocopy | VIGTPQRPAAPNTILVGSPHTPNTHFVSQNQASDSSPWSAGKCNRKGEKNGKGLRHFSLKVCEKVQRKGI |
Parental | TSYNEVADELVAEFSAADNHILPNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQEC |
TSY.EVADEL.AEFSAAD.HILPNESAYDQKN.R.RVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQEC | |
Retrocopy | TSYKEVADELIAEFSAADSHILPNESAYDQKNVR*RVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQEC |
Parental | QNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQAEQQANRPPPSNSVIHLPFIIVNTSKKTVI |
QNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQAE.Q.NRPPP.NSVIHLPFI.VNTSKKTVI | |
Retrocopy | QNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQAEHQVNRPPPCNSVIHLPFILVNTSKKTVI |
Parental | DCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAD--LMARSLVPKALEPYVTXXXXXXX |
DCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSA....MARSLVPKALEPYVT....... | |
Retrocopy | DCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTV |
Parental | XXXXXTSSGSTSNGTRLSASDLTNGADGTLATSSSGSQYSGSRVETPVS |
.....TSSGSTSNGT.LSASDLTNGADGTLATSSSGSQYSGSRVE.P.S | |
Retrocopy | SGVSVTSSGSTSNGTKLSASDLTNGADGTLATSSSGSQYSGSRVEMPMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004467 | 8 retrocopies |
retro_chof_2187, retro_chof_2229, retro_chof_2621, retro_chof_506, retro_chof_529 , retro_chof_837, retro_chof_854, retro_chof_895,
|
Callithrix jacchus | ENSCJAG00000006950 | 2 retrocopies | |
Homo sapiens | ENSG00000198176 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000004908 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000007927 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012165 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007423 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038482 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000849 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003532 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025889 | 3 retrocopies |