RetrogeneDB ID: | retro_ggor_17 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:37636133..37637363(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000025466 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TFDP1 | ||
Ensembl ID: | ENSGGOG00000004908 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKDAGLIEANGELKVFIDQNLSPGKGVVSLVAVHPSTVNPLGKQLLPKTFGQSNVNIAQQVVIGTPQRP |
MAKDAGLIEANGELKVFIDQNLS.GKGVVSLVAVHPSTVNPLGKQLLPKTFGQSNV.IAQQVVIG.PQRP | |
Retrocopy | MAKDAGLIEANGELKVFIDQNLSSGKGVVSLVAVHPSTVNPLGKQLLPKTFGQSNVSIAQQVVIGMPQRP |
Parental | AASNTLVVGSPHTPSTHFASQNQPSDSSPWSAGKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVAD |
AASNTLVVGS.HTPSTHFASQNQPSDSSP.SAGKRNRKGE.N.KGLRHFSMKVCEKVQRKGTTSYNEVAD | |
Retrocopy | AASNTLVVGSSHTPSTHFASQNQPSDSSPRSAGKRNRKGE-NCKGLRHFSMKVCEKVQRKGTTSYNEVAD |
Parental | ELVAEFSAADNHILPNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQ |
ELVAEFSAADNHILPNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQ | |
Retrocopy | ELVAEFSAADNHILPNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQ |
Parental | RRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDK |
RRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDK | |
Retrocopy | RRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDK |
Parental | FEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVGGVFITTA |
.EYLFNFDNTFEI..DIEVLKRMGMAC.LESGSCSAEDLKMARSLVPKALEPYVTEMA.GTVGGVFIT.A | |
Retrocopy | LEYLFNFDNTFEIQGDIEVLKRMGMACWLESGSCSAEDLKMARSLVPKALEPYVTEMAEGTVGGVFITAA |
Parental | GSTSNGTRFSASDLTNGADGMLATSSNGSQYSGSRVETPVSAYSQED |
GSTS.GTRFSASDLTNGADGMLATSS..SQYSGSRVETPVS.....D | |
Retrocopy | GSTSKGTRFSASDLTNGADGMLATSSKRSQYSGSRVETPVSYVGEDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .43 RPM | 23 .69 RPM |
SRP007412_cerebellum | 0 .00 RPM | 35 .18 RPM |
SRP007412_heart | 0 .13 RPM | 6 .91 RPM |
SRP007412_kidney | 0 .16 RPM | 17 .09 RPM |
SRP007412_liver | 0 .98 RPM | 11 .71 RPM |
SRP007412_testis | 0 .62 RPM | 46 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_132 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004467 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000006950 | 2 retrocopies | |
Homo sapiens | ENSG00000198176 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000004908 | 2 retrocopies |
retro_ggor_17 , retro_ggor_335,
|
Loxodonta africana | ENSLAFG00000007927 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012165 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007423 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038482 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000849 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003532 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025889 | 3 retrocopies |