RetrogeneDB ID: | retro_ggor_335 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:189222713..189223885(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TFDP1 | ||
Ensembl ID: | ENSGGOG00000004908 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.49 % |
Parental protein coverage: | 98.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAKDAGLIEANGELKVFIDQNLSPGKGV-VSLVAVHPSTVNPLGKQLLPKTFGQSNVNIAQQVVIGTPQR |
MAK.AGLIEANGELKVFIDQNLSPGKG..VSL.AVHPS.V.PLGKQLLPKTFGQSN.N...QVV.GTPQR | |
Retrocopy | MAKVAGLIEANGELKVFIDQNLSPGKGI>VSLMAVHPSIVSPLGKQLLPKTFGQSNINVVPQVVTGTPQR |
Parental | PAASNTLVVGSPHTPSTHFASQNQPSDSSPWSAGKRNRKGEKNGK-GLRHFSMKVCEKVQRKGTTSYNEV |
PAASNTLV.GSPHT.STHFASQNQPSDSSPWSAGK.NRKGEKNGK.GL.HFS.KV..KVQ.KGTTSY.EV | |
Retrocopy | PAASNTLVIGSPHTASTHFASQNQPSDSSPWSAGKCNRKGEKNGK<GLWHFSRKV*DKVQWKGTTSYHEV |
Parental | ADELVAEFSAADNHILPNESAYDQKNI-RRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEV |
ADEL..EFSAA.NHILP.ESAYDQ.NI.RRRVY.ALNVLMAMNI.SKEKKEIK..GLPTNSAQECQN.EV | |
Retrocopy | ADELAEEFSAASNHILPSESAYDQSNI<RRRVYYALNVLMAMNI-SKEKKEIK*VGLPTNSAQECQNSEV |
Parental | ERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSIS |
ERQRRL.RIKQK.S.................RN.HAEQQAS.P..P...IHLPFIIVNTSKKTVIDCSIS | |
Retrocopy | ERQRRLDRIKQKISISETYLTVNCLQEPGEERNQHAEQQASQPTTPSWLIHLPFIIVNTSKKTVIDCSIS |
Parental | NDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVGGVFI |
NDKFEYLFNFDNT.EI..DIEVLKRM.MACGLESGS.SAEDLKMARSLVPKALEPYVTEMAQGTVGGVFI | |
Retrocopy | NDKFEYLFNFDNTSEIYNDIEVLKRMSMACGLESGSFSAEDLKMARSLVPKALEPYVTEMAQGTVGGVFI |
Parental | TTAGSTSNGTRFSASDLTNGADGMLATSSNGSQYS-GSRVETPVS |
TTA.S.SNG...SASDLTNG.D..LATSSN.S....G.R...P.S | |
Retrocopy | TTARSMSNGKKLSASDLTNGVDEILATSSNLSTMAPGRRPRCPTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 23 .69 RPM |
SRP007412_cerebellum | 0 .04 RPM | 35 .18 RPM |
SRP007412_heart | 0 .00 RPM | 6 .91 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .09 RPM |
SRP007412_liver | 0 .00 RPM | 11 .71 RPM |
SRP007412_testis | 9 .12 RPM | 46 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_299 |
Pongo abelii | retro_pabe_378 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004467 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000006950 | 2 retrocopies | |
Homo sapiens | ENSG00000198176 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000004908 | 2 retrocopies |
retro_ggor_17, retro_ggor_335 ,
|
Loxodonta africana | ENSLAFG00000007927 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012165 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007423 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038482 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000849 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003532 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025889 | 3 retrocopies |