Parental gene:

TFDP1, ENSMMUG00000007423

Aliases:None
Description:None
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:17:93702979..93740915(+)


>ENSMMUG00000007423
TTTCTGCAGGCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGAAAAGGCGT
GGTGTCCCTCGTGGCTGTTCACCCCTCCACCGTCAACCCGCTCGGGAAGCAGCTCTTGCCAAAAACCTTTGGACAGTCCA
ATGTCAACATTGCCCAGCAAGTGGTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGCCCA
CACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGGGAAGCGCAACAGGAA
AGGAGAGAAGAATGGCAAGGGCCTGCGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTTCCT
ACAACGAAGTGGCGGACGAGCTGGTCGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCAGCTTATGAC
CAGAAGAACATAAGACGGCGCGTCTACGATGCCTTAAATGTGCTGATGGCCATGAACATCATCTCCAAGGAGAAGAAGGA
GATCAAGTGGATTGGTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGAGGTGGAAAGACAGAGGAGACTTGAAA
GAATAAAACAGAAACAGTCTCAACTTCAAGAACTTATTCTACAGCAAATTGCCTTCAAGAACCTGGTGCAGAGAAACCGG
CATGCGGAGCAGCAGGCCAGCCGGCCGCCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAGCAA
GAAGACGGTCATCGACTGCAGCATCTCCAATGACAAATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCCACG
ATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGTGGACTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAAATG
GCCAGAAGTCTGGTCCCCAAGGCTCTAGAGCCGTACGTGACAGAAATGGCTCAGGGAACTGTTGGAGGCGTGTTCATCAC
GACGGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAGTGACCTGACCAACGGCGCAGATGGGATGCTGGCCACAA
GCTCCAATGGGTCTCAGTACAGCGGCTCCAGGGTGGGGACCCCGGTGTCCTACGTCGGGGAGGACGAT

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 29 .19 RPM
SRP007412_brain 16 .14 RPM
SRP007412_cerebellum 29 .38 RPM
SRP007412_heart 15 .25 RPM
SRP007412_kidney 19 .95 RPM
SRP007412_liver 13 .18 RPM
SRP007412_testis 37 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004467 ortholog_one2many 8 retrogenes
retro_chof_2187, retro_chof_2229, retro_chof_2621, retro_chof_506, retro_chof_529, retro_chof_837, retro_chof_854, retro_chof_895,
Callithrix jacchus ENSCJAG00000006950 ortholog_one2many 2 retrogenes
retro_cjac_179, retro_cjac_4094,
Homo sapiens ENSG00000198176 ortholog_one2one 4 retrogenes
retro_hsap_1601, retro_hsap_299, retro_hsap_4803, retro_hsap_61,
Gorilla gorilla ENSGGOG00000004908 ortholog_one2one 2 retrogenes
retro_ggor_17, retro_ggor_335,
Loxodonta africana ENSLAFG00000007927 ortholog_many2many 1 retrogene
retro_lafr_914,
Myotis lucifugus ENSMLUG00000012165 ortholog_one2many 1 retrogene
retro_mluc_896,
Mus musculus ENSMUSG00000038482 ortholog_one2many 2 retrogenes
retro_mmus_3243, retro_mmus_338,
Nomascus leucogenys ENSNLEG00000000849 ortholog_one2one 3 retrogenes
retro_nleu_2177, retro_nleu_2598, retro_nleu_49,
Otolemur garnettii ENSOGAG00000003532 ortholog_one2many 1 retrogene
retro_ogar_3334,
Pongo abelii ENSPPYG00000025889 ortholog_one2one 3 retrogenes
retro_pabe_1314, retro_pabe_132, retro_pabe_378,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_177 92.41 61.70
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Download FASTA sequences of all ENSMMUG00000007423 retrocopies