Parental gene: | TFDP1, ENSG00000198176 |
| Aliases: | TFDP1, DP1, DRTF1, Dp-1 |
| Description: | transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 13:114239012..114295785(+) |
>ENSG00000198176
ATGGCAAAAGATGCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGGAAAGG
CGTGGTGTCCCTCGTGGCCGTTCACCCCTCCACCGTCAACCCGCTCGGGAAGCAGCTCTTGCCAAAAACCTTTGGACAGT
CCAATGTCAACATTGCCCAGCAAGTGGTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGC
CCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGGGAAGCGCAACAG
GAAAGGAGAGAAGAATGGCAAGGGCCTACGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTT
CCTACAACGAAGTGGCAGACGAGCTGGTTGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCAGCTTAT
GACCAGAAAAACATAAGACGGCGCGTCTACGATGCCTTAAACGTGCTAATGGCCATGAACATCATCTCCAAGGAGAAGAA
GGAGATCAAGTGGATTGGTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGAGGTGGAAAGACAGAGGAGACTTG
AAAGAATAAAACAGAAACAGTCTCAACTTCAAGAACTTATTCTACAGCAAATTGCCTTCAAGAACCTGGTGCAGAGAAAC
CGGCATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAG
CAAGAAGACGGTCATCGACTGCAGCATCTCCAATGACAAATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCC
ACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAA
ATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCATACGTGACAGAAATGGCTCAGGGAACTGTTGGAGGCGTGTTCAT
CACGACGGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAGTGACCTGACCAACGGTGCAGATGGGATGCTGGCCA
CAAGCTCCAATGGGTCTCAGTACAGCGGCTCCAGGGTGGAGACTCCGGTGTCCTACGTCGGGGAGGACGACGAGGAGGAC
GATGACTTCAACGAGAATGACGAGGACGACTGA
ATGGCAAAAGATGCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGGAAAGG
CGTGGTGTCCCTCGTGGCCGTTCACCCCTCCACCGTCAACCCGCTCGGGAAGCAGCTCTTGCCAAAAACCTTTGGACAGT
CCAATGTCAACATTGCCCAGCAAGTGGTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGC
CCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGGGAAGCGCAACAG
GAAAGGAGAGAAGAATGGCAAGGGCCTACGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTT
CCTACAACGAAGTGGCAGACGAGCTGGTTGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCAGCTTAT
GACCAGAAAAACATAAGACGGCGCGTCTACGATGCCTTAAACGTGCTAATGGCCATGAACATCATCTCCAAGGAGAAGAA
GGAGATCAAGTGGATTGGTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGAGGTGGAAAGACAGAGGAGACTTG
AAAGAATAAAACAGAAACAGTCTCAACTTCAAGAACTTATTCTACAGCAAATTGCCTTCAAGAACCTGGTGCAGAGAAAC
CGGCATGCGGAGCAGCAGGCCAGCCGGCCACCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAG
CAAGAAGACGGTCATCGACTGCAGCATCTCCAATGACAAATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCC
ACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGCGGGCTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAA
ATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCATACGTGACAGAAATGGCTCAGGGAACTGTTGGAGGCGTGTTCAT
CACGACGGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAGTGACCTGACCAACGGTGCAGATGGGATGCTGGCCA
CAAGCTCCAATGGGTCTCAGTACAGCGGCTCCAGGGTGGAGACTCCGGTGTCCTACGTCGGGGAGGACGACGAGGAGGAC
GATGACTTCAACGAGAATGACGAGGACGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 26 .53 RPM |
| bodymap2_lung | 43 .64 RPM |
| bodymap2_breast | 49 .26 RPM |
| bodymap2_adipose | 21 .07 RPM |
| bodymap2_adrenal | 51 .07 RPM |
| bodymap2_skeletal_muscle | 13 .62 RPM |
| bodymap2_thyroid | 45 .40 RPM |
| bodymap2_prostate | 38 .73 RPM |
| bodymap2_colon | 44 .51 RPM |
| bodymap2_testis | 75 .75 RPM |
| bodymap2_brain | 22 .15 RPM |
| bodymap2_heart | 44 .20 RPM |
| bodymap2_white_blood_cells | 53 .51 RPM |
| bodymap2_lymph_node | 50 .36 RPM |
| bodymap2_ovary | 47 .38 RPM |
| bodymap2_kidney | 53 .21 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000004467 | ortholog_one2many | 8 retrogenes | |
| Callithrix jacchus | ENSCJAG00000006950 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004908 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000007927 | ortholog_many2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012165 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007423 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000038482 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000849 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000003532 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025889 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_61 | 77.89 | 92.44 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_299 | 85.27 | 93.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_1601 | 91.15 | 73.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_4803 | 95.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000198176 retrocopies