RetrogeneDB ID: | retro_chof_895 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_16453:4292..5077(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000004467 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80. % |
Parental protein coverage: | 75.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TTSYNEVADELVAEFSAADNHILPNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQE |
TTSY.EVADELVAEFSAADNHILPNESAYDQ.NI.R.VY.ALNVLMAMNIISKEKKEIKWIGLPTNSAQE | |
Retrocopy | TTSYKEVADELVAEFSAADNHILPNESAYDQRNI*R-VYNALNVLMAMNIISKEKKEIKWIGLPTNSAQE |
Parental | CQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQAEQQANRPPPSNSVIHLPFIIVNTSKKTV |
CQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQA.QQAN.PPPSNS.IHL.FII.N...K.. | |
Retrocopy | CQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRQAQQQANWPPPSNSIIHLLFIIMN-TSKKT |
Parental | I-DCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSA-DL-MARSLVPKALEPYVTXXXXX |
..DC.ISN.KFEYLFNFDNTFE.H.D.EV...MGMACGLESGS..A.DL.MARSLVPK.LEPYV...... | |
Retrocopy | V<DCRISNKKFEYLFNFDNTFEVHNDTEVINQMGMACGLESGSYLAKDLKMARSLVPKVLEPYVIEMAQG |
Parental | XXXXXXXTSSGSTSNGTRLSASDLTNGADGTLATSSSGSQYSGSRVETPVSYVGE |
.......TS.GSTSNGTRLS..DLTN.ADGTL.TSSSGSQ.SGSRVE..VSYV.. | |
Retrocopy | SISSVFVTSPGSTSNGTRLSFNDLTNVADGTLGTSSSGSQHSGSRVEMLVSYVSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004467 | 8 retrocopies |
retro_chof_2187, retro_chof_2229, retro_chof_2621, retro_chof_506, retro_chof_529, retro_chof_837, retro_chof_854, retro_chof_895 ,
|
Callithrix jacchus | ENSCJAG00000006950 | 2 retrocopies | |
Homo sapiens | ENSG00000198176 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000004908 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000007927 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012165 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007423 | 1 retrocopy | |
Mus musculus | ENSMUSG00000038482 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000849 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003532 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025889 | 3 retrocopies |