RetrogeneDB ID: | retro_cjac_283 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:116708211..116708523(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000021866 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000013281 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAQFIRNLVEKTPALVNAAVTYSKPQLATFWYYAKVELIPPTPAEIPRAIQSLKEIVNSAQTGSFKQLTV |
MAQFIRNLVEKTPALVNAAVTYSKPQLATFWYYAKVELIPPTPAEIPRAIQSLKEIVNSAQTGSFKQLTV | |
Retrocopy | MAQFIRNLVEKTPALVNAAVTYSKPQLATFWYYAKVELIPPTPAEIPRAIQSLKEIVNSAQTGSFKQLTV |
Parental | KEAVLNGLVATEVLMWFYVGEIIGKRGIIGYDV |
KEAVLNGLVATEVLMWFYVGEIIGKRGIIGYDV | |
Retrocopy | KEAVLNGLVATEVLMWFYVGEIIGKRGIIGYDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 5 .66 RPM | 6 .43 RPM |
SRP051959_heart | 11 .40 RPM | 9 .88 RPM |
SRP051959_kidney | 9 .32 RPM | 9 .27 RPM |
SRP051959_liver | 5 .63 RPM | 5 .87 RPM |
SRP051959_lung | 4 .29 RPM | 3 .43 RPM |
SRP051959_lymph_node | 5 .00 RPM | 5 .64 RPM |
SRP051959_skeletal_muscle | 16 .12 RPM | 14 .76 RPM |
SRP051959_spleen | 4 .52 RPM | 5 .44 RPM |