RetrogeneDB ID: | retro_pabe_688 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:41428545..41428854(+) | ||
Located in intron of: | ENSPPYG00000003399 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5L | ||
Ensembl ID: | ENSPPYG00000003933 | ||
Aliases: | None | ||
Description: | ATP synthase subunit g, mitochondrial [Source:RefSeq peptide;Acc:NP_001124640] |
Percent Identity: | 71.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MAQFVRNLVEKTPALVNAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSAQTGSFKQLTV |
M..FV.NL.E..PA.VN.AVTY.KPRLATF.Y.AKVEL.PPTP.EI..AIQSLKKIVNSA.T.SF.QLTV | |
Retrocopy | MV*FV*NLEEEAPAPVNTAVTYLKPRLATFRY*AKVELTPPTPTEILTAIQSLKKIVNSAHTASF*QLTV |
Parental | KEAVLNGLVATEVLMWFYVGEIIGKRGIIGYDV |
.EAVLNG.VATEV.MWFY.G.II.K...I.Y.V | |
Retrocopy | EEAVLNGSVATEV*MWFYIGAIISKHCTIAYNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 52 .91 RPM |
SRP007412_cerebellum | 0 .12 RPM | 41 .22 RPM |
SRP007412_heart | 0 .00 RPM | 114 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 85 .12 RPM |
SRP007412_liver | 0 .03 RPM | 45 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_860 |
Pan troglodytes | retro_ptro_597 |