RetrogeneDB - Parental gene ENSEEUG00000009863 details

							
>ENSEEUG00000009863
ATGGCTCAGTTTGTCCGTAACCTCGCTGAGAAGGCCCCGACGCTGATAAACGCTGCTGTGACTTACTCCAAGCCTCGATT

GGCCACATTTTGGCAGTATGCCAAGGTTGAGCTGGTTCCTCCAACCCCTGCTGAGATCCCTACAGCTATTCAGAGCTTGA

AAAAAATAGTCAATAGTGCTAAAACTGGTAGCTTCAAACATCTCACAGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNGAGGTGTGGATGTTTTATGTCGGCGAGATCATAGGCAAGCGTCTCATTGGTTATAATGTTTGA

Library	Parental gene expression (RPM)
SRP017611_liver	56 .91 RPM
SRP017611_kidney	124 .15 RPM
SRP017611_brain	24 .82 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Bos taurus	ENSBTAG00000007332	ortholog_one2many	2 retrogenes	retro_btau_105, retro_btau_245,
Choloepus hoffmanni	ENSCHOG00000010589	ortholog_one2one	3 retrogenes	retro_chof_1454, retro_chof_1865, retro_chof_2204,
Callithrix jacchus	ENSCJAG00000013281	ortholog_one2many	1 retrogene	retro_cjac_283,
Dasypus novemcinctus	ENSDNOG00000019354	ortholog_one2one	5 retrogenes	retro_dnov_1491, retro_dnov_1872, retro_dnov_2169, retro_dnov_2341, retro_dnov_344,
Equus caballus	ENSECAG00000023715	ortholog_one2one	1 retrogene	retro_ecab_434,
Echinops telfairi	ENSETEG00000008755	ortholog_one2one	11 retrogenes	retro_etel_1239, retro_etel_166, retro_etel_1884, retro_etel_1885, retro_etel_2183, retro_etel_241, retro_etel_254, retro_etel_355, retro_etel_822, retro_etel_876, retro_etel_995,
Felis catus	ENSFCAG00000011782	possible_ortholog	4 retrogenes	retro_fcat_1358, retro_fcat_1615, retro_fcat_1941, retro_fcat_371,
Homo sapiens	ENSG00000167283	ortholog_one2many	5 retrogenes	retro_hsap_3029, retro_hsap_3110, retro_hsap_63, retro_hsap_860, retro_hsap_883,
Loxodonta africana	ENSLAFG00000030274	ortholog_one2many	3 retrogenes	retro_lafr_1209, retro_lafr_135, retro_lafr_3,
Macropus eugenii	ENSMEUG00000015281	ortholog_one2one	1 retrogene	retro_meug_1774,
Microcebus murinus	ENSMICG00000015233	ortholog_one2one	6 retrogenes	retro_mmur_1428, retro_mmur_237, retro_mmur_365, retro_mmur_513, retro_mmur_700, retro_mmur_725,
Macaca mulatta	ENSMMUG00000017604	ortholog_one2many	4 retrogenes	retro_mmul_1333, retro_mmul_22, retro_mmul_25, retro_mmul_262,
Mus musculus	ENSMUSG00000038717	ortholog_one2many	1 retrogene	retro_mmus_139,
Nomascus leucogenys	ENSNLEG00000007362	ortholog_one2many	6 retrogenes	retro_nleu_425, retro_nleu_608, retro_nleu_765, retro_nleu_81, retro_nleu_841, retro_nleu_846,
Oryctolagus cuniculus	ENSOCUG00000029455	ortholog_one2one	4 retrogenes	retro_ocun_1140, retro_ocun_1156, retro_ocun_1418, retro_ocun_567,
Otolemur garnettii	ENSOGAG00000016298	ortholog_one2many	10 retrogenes	retro_ogar_1097, retro_ogar_1102, retro_ogar_176, retro_ogar_3286, retro_ogar_3332, retro_ogar_352, retro_ogar_433, retro_ogar_444, retro_ogar_533, retro_ogar_573,
Pongo abelii	ENSPPYG00000003933	ortholog_one2one	5 retrogenes	retro_pabe_1913, retro_pabe_2508, retro_pabe_2568, retro_pabe_2589, retro_pabe_688,
Pan troglodytes	ENSPTRG00000004342	ortholog_one2one	5 retrogenes	retro_ptro_1518, retro_ptro_2043, retro_ptro_2102, retro_ptro_2478, retro_ptro_597,
Rattus norvegicus	ENSRNOG00000028884	ortholog_one2one	19 retrogenes	retro_rnor_1145, retro_rnor_1160, retro_rnor_1185, retro_rnor_1319, retro_rnor_1345, retro_rnor_1379, retro_rnor_1420, retro_rnor_1468, retro_rnor_1993, retro_rnor_2258, retro_rnor_2271, retro_rnor_2404, retro_rnor_2573, retro_rnor_2650, retro_rnor_2723, retro_rnor_2735, retro_rnor_2929, retro_rnor_660, retro_rnor_698,
Sus scrofa	ENSSSCG00000023777	ortholog_one2one	5 retrogenes	retro_sscr_196, retro_sscr_270, retro_sscr_378, retro_sscr_463, retro_sscr_500,
Ictidomys tridecemlineatus	ENSSTOG00000014400	ortholog_one2one	2 retrogenes	retro_itri_1649, retro_itri_332,
Tupaia belangeri	ENSTBEG00000009999	ortholog_one2one	4 retrogenes	retro_tbel_1364, retro_tbel_4005, retro_tbel_857, retro_tbel_959,
Tarsius syrichta	ENSTSYG00000002686	ortholog_one2one	4 retrogenes	retro_tsyr_1516, retro_tsyr_1688, retro_tsyr_2166, retro_tsyr_578,
Tursiops truncatus	ENSTTRG00000004284	ortholog_one2one	9 retrogenes	retro_ttru_1088, retro_ttru_1125, retro_ttru_1255, retro_ttru_1537, retro_ttru_1781, retro_ttru_541, retro_ttru_716, retro_ttru_810, retro_ttru_972,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_eeur_106	54.76	83.17	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_eeur_111	75.51	94.06	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_eeur_333	70.87	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_eeur_495	70.87	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_eeur_499	75.51	94.06	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_eeur_589	85.71	95.05	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_eeur_606	80.58	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSEEUG00000009863 retrocopies

Parental gene:	ENSEEUG00000009863
Aliases:	None
Description:	None
Organism:	*Hedgehog (Erinaceus europaeus)*
Coordinates:	GeneScaffold_2151:63549..67924(+)

Parental gene:

ENSEEUG00000009863