RetrogeneDB ID: | retro_eeur_106 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_6595:8049..8295(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000009863 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.76 % |
Parental protein coverage: | 83.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AQFVRNLAEKAPTLINAAVTYSKPRLATFWQYAKVELVPPTPAEIPTAIQSLKKIVNSAKTGSFKHLTVK |
AQFV.NL..KA..L.NAA.TYSKP..ATFWQ.AKVELVPP.P...P..I..L.........GSFKH.TVK | |
Retrocopy | AQFVHNLTKKALMLLNAALTYSKPSWATFWQSAKVELVPPKPS--PAEIPTLFRTWGXXXVGSFKHITVK |
Parental | XXXXXXXXXXEVWM |
..........EVWM | |
Retrocopy | EAVLNGLVATEVWM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .81 RPM | 24 .82 RPM |
SRP017611_kidney | 0 .94 RPM | 124 .15 RPM |
SRP017611_liver | 0 .16 RPM | 56 .91 RPM |