RetrogeneDB ID: | retro_eeur_111 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_7122:6910..7200(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000009863 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.51 % |
Parental protein coverage: | 94.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAQFVRNLAEKA-PTLINAAVTYSKPRLATFWQYAKVELVPPTPAEIPTAIQSL-KKIVNSAKTGSFKHL |
MAQFV.NL.EKA..TLINAAVTYSKP.LATFWQYAKV.LV.PTPAEIPTAIQSL....VNSAKTGSFKHL | |
Retrocopy | MAQFVHNLTEKA<QTLINAAVTYSKPQLATFWQYAKVGLVLPTPAEIPTAIQSLXXXXVNSAKTGSFKHL |
Parental | TVKXXXXXXXXXXEVWM-FYVGEIIGKR |
TV...........EVWM.FYV.EIIGKR | |
Retrocopy | TVREAVLNGLVATEVWMWFYVREIIGKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 24 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 124 .15 RPM |
SRP017611_liver | 0 .00 RPM | 56 .91 RPM |