RetrogeneDB ID: | retro_ocun_1156 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:14889861..14890128(+) | ||
Located in intron of: | ENSOCUG00000024304 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000002404 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000029455 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.52 % |
Parental protein coverage: | 86.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAQFVRNLAEKAPALVNAAVTYSKPRLATFWHYAKVELVPPTPAEIPTAIQSLKKIVHSAQTGSFKQLTV |
MAQFV.NL.EK.PALVN.AVTYSK.RLATFWHY.KVELVPP.PA.IPTAIQSLKKI..SAQTGSFK.LT. | |
Retrocopy | MAQFVHNLTEKTPALVNTAVTYSKSRLATFWHYTKVELVPPNPAKIPTAIQSLKKIANSAQTGSFKELTA |
Parental | KEAVLNGLVATEVWMWFYI |
KEAVLNGLVATEVWMWFYI | |
Retrocopy | KEAVLNGLVATEVWMWFYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 128 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 254 .10 RPM |
SRP017611_liver | 0 .08 RPM | 35 .30 RPM |