RetrogeneDB ID: | retro_ocun_1418 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:64192670..64192975(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000029455 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MAQFVRNLAEKAPALVNAAVTYSKPRLATFWHYAKV-ELVPPTPAEIPTAIQSLKKIVHSA-QTGSFKQL |
.AQF..NL..K.PAL.N.A.......L.TFW.Y..V.....PTPAEIPTAI..LKK...S..Q.GS.KQL | |
Retrocopy | LAQFIHNLS*KVPALPNIARA*LSLQLSTFWYYTQV<KQISPTPAEIPTAIKILKKKINSF<QSGSLKQL |
Parental | TVKEAVLNGLVATEVWMWFYIGE-IIGKRG-IVGYNV |
T.KEAVLNGLV.T..W..FYI.......RG.I.GYNV | |
Retrocopy | TLKEAVLNGLVDTNIWN*FYIRD<LQASRG<IIGYNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 128 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 254 .10 RPM |
SRP017611_liver | 0 .00 RPM | 35 .30 RPM |