RetrogeneDB ID: | retro_cpor_1133 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:25411285..25411556(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSCPOG00000005164 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P63209] |
Percent Identity: | 69.15 % |
Parental protein coverage: | 56.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LQSSDG-EIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPV-LPNVNAAILKKVIQWCTHHKDDPPPPED |
.QSSD..E.FEVDVEIAK.SVT.KT.LE.L.M..EGDDDPV.LPNVNAAILK.VIQWC.HH..D.P.P.. | |
Retrocopy | MQSSDR<ETFEVDVEIAKPSVTTKTLLEGLRMGGEGDDDPVPLPNVNAAILKRVIQWCAHHRGDTP-PPE |
Parental | DEN-KEKRTDDIPVWDQEFLKVDQ |
....K..RTDDIP..DQEFLKV.Q | |
Retrocopy | EGQ<KKNRTDDIPI*DQEFLKVGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 191 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .43 RPM |
SRP017611_liver | 0 .00 RPM | 181 .81 RPM |
SRP040447_lung | 0 .00 RPM | 157 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 111 .74 RPM |