RetrogeneDB ID: | retro_cpor_830 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:35342066..35342454(+) | ||
Located in intron of: | ENSCPOG00000013482 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSCPOG00000005164 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P63209] |
Percent Identity: | 72.52 % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DDEGDDDPVLP-NVNAAILK--KVIQWCTHHKDDPP-PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFEL |
.D.GDDDPV.P.N.NA.I......IQWCT.H..D...P.E.DENKEK.TDDIPVWD.EFLK.DQGTLFEL | |
Retrocopy | NDDGDDDPVPPPNTNAVIXXXXNTIQWCT-HHKDDL>PLENDENKEK*TDDIPVWDKEFLKIDQGTLFEL |
Parental | ILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE-AQVRKENQWCEEK |
I.AANYL.IKGLLDVTCKT.ANMIKGK.PE.I..TFN..N.FTEEEE.AQV.KENQWC.EK | |
Retrocopy | IVAANYLNIKGLLDVTCKTDANMIKGKIPEDICETFNVQNVFTEEEEGAQVPKENQWCQEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 191 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .43 RPM |
SRP017611_liver | 0 .00 RPM | 181 .81 RPM |
SRP040447_lung | 0 .00 RPM | 157 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 111 .74 RPM |