RetrogeneDB ID: | retro_cpor_1446 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_85:3260856..3261332(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSCPOG00000005164 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P63209] |
Percent Identity: | 75.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPV-LPNVNAAILKKVIQWCTHHKDDPP |
MPSIK..SSDGEI.EV.V.IAKQSVT..TMLEDL.MDD.G..DPV.LPNVN..I.K.V.Q.CTHHK..PP | |
Retrocopy | MPSIKF*SSDGEISEVNVKIAKQSVTTRTMLEDLEMDDDGGNDPVPLPNVN--IFKNVTQ*CTHHKEEPP |
Parental | P-PEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF |
P.PEDDEN.EK.TD..PVWDQEFLKVDQGTLFELILAAN...IK.LLDVTCKTV.N.IKGKTP.EI.KTF | |
Retrocopy | PSPEDDENQEK*TDHDPVWDQEFLKVDQGTLFELILAAN---IKSLLDVTCKTVVNLIKGKTPKEIHKTF |
Parental | NIKNDFTEEEEA-QVRKENQWCEEK |
N.KNDF.E.EEA.QV.KEN.WCEE. | |
Retrocopy | NTKNDFPEREEA<QVHKENRWCEEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 191 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .43 RPM |
SRP017611_liver | 0 .00 RPM | 181 .81 RPM |
SRP040447_lung | 0 .00 RPM | 157 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 111 .74 RPM |