RetrogeneDB ID: | retro_cpor_1345 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_70:8147085..8147364(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSCPOG00000005164 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P63209] |
Percent Identity: | 73.12 % |
Parental protein coverage: | 57.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN |
PPED.EN.EK.TD.IPVWD.EFLKVDQG.L....LAA.YLDIK.LLD.T.KT.A.MIKGKTPEE..K.FN | |
Retrocopy | PPEDKEN*EK*TDHIPVWD*EFLKVDQGILSKFTLAAHYLDIKALLDITYKTAASMIKGKTPEETGKMFN |
Parental | IKNDFTEEEEAQVRKENQWCEEK |
IKNDF.EEEE.QV.KENQWC... | |
Retrocopy | IKNDFPEEEEVQVHKENQWCRNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 191 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .43 RPM |
SRP017611_liver | 0 .00 RPM | 181 .81 RPM |
SRP040447_lung | 0 .00 RPM | 157 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 111 .74 RPM |