RetrogeneDB ID: | retro_cpor_832 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:46046567..46047055(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKP1 | ||
Ensembl ID: | ENSCPOG00000005164 | ||
Aliases: | None | ||
Description: | S-phase kinase-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P63209] |
Percent Identity: | 94.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPV-LPNVNAAILKKVIQWCTHHKDD-P |
MPSIKLQSSDGEIFEVDVEIAKQSVTIK..LEDLGMDDEGDDDPV.LPNVNAAILK.VIQ.CTH.KDD.P | |
Retrocopy | MPSIKLQSSDGEIFEVDVEIAKQSVTIKNVLEDLGMDDEGDDDPVPLPNVNAAILKRVIQ*CTHYKDD<P |
Parental | PPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF |
PPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF | |
Retrocopy | PPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF |
Parental | NIKNDFTEEEEAQVRKENQWCEEK |
NIKN.FTEEEEA.VRKENQWCEEK | |
Retrocopy | NIKNNFTEEEEAHVRKENQWCEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 32 .09 RPM | 191 .07 RPM |
SRP017611_kidney | 36 .95 RPM | 228 .43 RPM |
SRP017611_liver | 28 .73 RPM | 181 .81 RPM |
SRP040447_lung | 17 .28 RPM | 157 .83 RPM |
SRP040447_skeletal_muscle | 13 .22 RPM | 111 .74 RPM |