RetrogeneDB ID: | retro_cpor_678 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_22:9838744..9839015(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSCPOG00000002862 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.65 % |
Parental protein coverage: | 56.96 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAERGLKSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWAIDSGAV-SDWNVGRAPDPRAVSCLRNHGI |
MA..GL..VLFV.LGNIC..P.AEAVFR.LVTD..IS.NW.....A..S...V...PD....SC...H.I | |
Retrocopy | MATPGLTPVLFVYLGNICWAPTAEAVFRNLVTD*SISNNWSVNCVAI>SIYEVKNSPDF*GQSCMTKHFI |
Parental | STAHKARQVTKEDFATFDYML |
.....A.QVT.EDF..FD..L | |
Retrocopy | PMSNTAQQVTTEDFTRFD*IL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .87 RPM |
SRP017611_liver | 0 .00 RPM | 12 .19 RPM |
SRP040447_lung | 0 .03 RPM | 14 .80 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 13 .28 RPM |