RetrogeneDB ID:

retro_etel_420

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_7054:146952..147415(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000013764
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_420
ATGGCTGAGCAGGCCCCCAAATCCGTTCTGTTTGTATGCCTGGGTAACATTTGTCGATCACCTATTGCAGAAGCAGTGTT
CAGAAAACGTGTAACGGATCAAAACCTTTTAGATAAGTGGAGAATAGACAGTGCAGCAACATCCACATATGAAATAGGAA
ATCCTCCTGATTATCGGGGGCAAAATTGCATGAAGAAGCATGGTATCCTCAGGAATCACATTGCTCGGCAGATTACCAAA
GAAGACTTTGCCAGATTTGATTTTATACTATGTATGGATGAAAGCAATCTGAGAGATCTAACTAGAAAAGGTAATCAAGT
TAAAAACTGCAAAGCTAAACCTGAACTGCTTGGAAACTATGATCCACAAAAACAAGTTATCCTTGAAGATCCCTATTATG
GGAATGACTGACTTGGAGACTGTGTACCAGCAGTGTCTTAGGTGCGGCGAGGCGTTTGGAGAA

ORF - retro_etel_420 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.92 %
Parental protein coverage: 98.1 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAEQAPKSVLFVCLGNICRSPIAEAVFRKLVTDQNLLDKWIIDSGAVSDWNVGRSPDPRAVSYLGSHDIN
MAEQAPKSVLFVCLGNICRSPIAEAVFRK.VTDQNLLDKW.IDS.A.S....G..PD.R.......H.I.
RetrocopyMAEQAPKSVLFVCLGNICRSPIAEAVFRKRVTDQNLLDKWRIDSAATSTYEIGNPPDYRGQNCMKKHGIL
ParentalSAHKARQITKEDFATFDFILCMDESNLRDLTRKGNQVKNCKAKIELLGNYDPQKQVIIED-PYYGNDSDF
..H.ARQITKEDFA.FDFILCMDESNLRDLTRKGNQVKNCKAK.ELLGNYDPQKQVI.ED.P..G...D.
RetrocopyRNHIARQITKEDFARFDFILCMDESNLRDLTRKGNQVKNCKAKPELLGNYDPQKQVILED>PIMGM-TDL
ParentalETVYQQCLRCCKAFLE
ETVYQQCLRC..AF.E
RetrocopyETVYQQCLRCGEAFGE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_420 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 33 parental genes, and 276 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000095542 retrocopies
Bos taurus ENSBTAG000000204984 retrocopies
Canis familiaris ENSCAFG000000300971 retrocopy
Choloepus hoffmanni ENSCHOG0000000389194 retrocopies
retro_chof_1010, retro_chof_1053, retro_chof_1073, retro_chof_1099, retro_chof_1100, retro_chof_1144, retro_chof_119, retro_chof_1190, retro_chof_121, retro_chof_1259, retro_chof_1265, retro_chof_1275, retro_chof_1330, retro_chof_1351, retro_chof_1359, retro_chof_1389, retro_chof_1390, retro_chof_1412, retro_chof_142, retro_chof_1444, retro_chof_1447, retro_chof_1508, retro_chof_1567, retro_chof_1570, retro_chof_1593, retro_chof_1632, retro_chof_1633, retro_chof_1658, retro_chof_1684, retro_chof_169, retro_chof_1698, retro_chof_17, retro_chof_1716, retro_chof_174, retro_chof_1799, retro_chof_1802, retro_chof_1815, retro_chof_1833, retro_chof_1838, retro_chof_1864, retro_chof_1941, retro_chof_1956, retro_chof_1993, retro_chof_2012, retro_chof_2041, retro_chof_2044, retro_chof_2091, retro_chof_2165, retro_chof_2192, retro_chof_2208, retro_chof_2228, retro_chof_2259, retro_chof_2344, retro_chof_2378, retro_chof_2384, retro_chof_2443, retro_chof_245, retro_chof_2478, retro_chof_2512, retro_chof_2532, retro_chof_2542, retro_chof_2551, retro_chof_261, retro_chof_262, retro_chof_2622, retro_chof_2636, retro_chof_2643, retro_chof_2653, retro_chof_2654, retro_chof_2678, retro_chof_2701, retro_chof_2705, retro_chof_2707, retro_chof_319, retro_chof_377, retro_chof_460, retro_chof_598, retro_chof_603, retro_chof_649, retro_chof_650, retro_chof_66, retro_chof_727, retro_chof_80, retro_chof_803, retro_chof_83, retro_chof_842, retro_chof_934, retro_chof_939, retro_chof_958, retro_chof_962, retro_chof_986, retro_chof_991, retro_chof_994, retro_chof_999,
Callithrix jacchus ENSCJAG000000116635 retrocopies
Cavia porcellus ENSCPOG000000028624 retrocopies
Dasypus novemcinctus ENSDNOG0000001738232 retrocopies
Dipodomys ordii ENSDORG000000164696 retrocopies
Equus caballus ENSECAG000000100791 retrocopy
Erinaceus europaeus ENSEEUG000000154681 retrocopy
Echinops telfairi ENSETEG00000013764 18 retrocopies
Felis catus ENSFCAG000000267171 retrocopy
Homo sapiens ENSG000001437275 retrocopies
Gorilla gorilla ENSGGOG000000155775 retrocopies
Loxodonta africana ENSLAFG000000029664 retrocopies
Macropus eugenii ENSMEUG000000107333 retrocopies
Myotis lucifugus ENSMLUG000000177074 retrocopies
Macaca mulatta ENSMMUG000000170972 retrocopies
Monodelphis domestica ENSMODG000000257643 retrocopies
Mustela putorius furoENSMPUG000000127872 retrocopies
Mus musculus ENSMUSG0000004457311 retrocopies
Nomascus leucogenys ENSNLEG000000083596 retrocopies
Oryctolagus cuniculus ENSOCUG0000001287611 retrocopies
Otolemur garnettii ENSOGAG000000003015 retrocopies
Procavia capensis ENSPCAG000000120541 retrocopy
Pongo abelii ENSPPYG000000126946 retrocopies
Pan troglodytes ENSPTRG000000116055 retrocopies
Pteropus vampyrus ENSPVAG000000133875 retrocopies
Rattus norvegicus ENSRNOG0000000526011 retrocopies
Sarcophilus harrisii ENSSHAG000000052164 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000025203 retrocopies
Tarsius syrichta ENSTSYG000000048647 retrocopies
Tursiops truncatus ENSTTRG000000107704 retrocopies



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