RetrogeneDB ID: | retro_cpor_868 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_30:17457413..17457811(+) | ||
Located in intron of: | ENSCPOG00000012221 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000021666 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACP1 | ||
Ensembl ID: | ENSCPOG00000002862 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 50.75 % |
Parental protein coverage: | 83.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AVFRKLVTDQNISDNWAIDSGAVSDWNVGRAPDPRAVSCLRNHGISTAHKARQVTKEDFATFDYMLCMDE |
A..R.....QNISD....DS.A.....VG..P.....SCL..H.I...H.ARQVTKED...F...LC... | |
Retrocopy | ALYRSEESSQNISDTLRTDSLAITTYEVGNLPEYVGQSCLEKHSIPMNHVARQVTKEDSEKFNSILCTWI |
Parental | SNLRDL-TRKSNQVKNCK-ARIELLGSYDPQKQLIIEDPYYGNESDFEQVYQQCVRCCKAFLEK |
...R.....K....K..K.A.I.LLGS.DPQKQ.IIEDP.YGNES....VYQQC..CCKAFLEK | |
Retrocopy | KTIRET*IEKVIKLKTAK<AKIKLLGSCDPQKQFIIEDPCYGNESNCKPVYQQCLWCCKAFLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .87 RPM |
SRP017611_liver | 0 .00 RPM | 12 .19 RPM |
SRP040447_lung | 0 .00 RPM | 14 .80 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 13 .28 RPM |