RetrogeneDB ID: | retro_dnov_255 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_3062:703077..703703(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HPRT1 | ||
Ensembl ID: | ENSDNOG00000008495 | ||
Aliases: | None | ||
Description: | hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:5157] |
Percent Identity: | 91.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ISDDEPGYDL-NLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADL |
IS.DEPGYDL.N.FCIPNHYAEDLER.FIPHGLIMDRT..LARDVMKEMGGHHI.ALCVLKGGYKFFADL | |
Retrocopy | ISKDEPGYDL<NSFCIPNHYAEDLERAFIPHGLIMDRTKWLARDVMKEMGGHHIIALCVLKGGYKFFADL |
Parental | LDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKXXXXXXDIIDTGKTMQTLLS |
LDYIKALNRNSDRSIPMTVDFIRLKSYC.DQSTGDIKVIGGDDLSTLTGK......DIIDTGKTMQTLLS | |
Retrocopy | LDYIKALNRNSDRSIPMTVDFIRLKSYCKDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLS |
Parental | LVKQYNPKMVKVASLLVKRTPRSVGYRPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA |
LVKQYNPKMVKVASLLVKRTPRSVGYRPDFVGFEIPDKFVVGYALDYNEY.RDLNHVCVIS.T..AKYKA | |
Retrocopy | LVKQYNPKMVKVASLLVKRTPRSVGYRPDFVGFEIPDKFVVGYALDYNEYLRDLNHVCVISKTRRAKYKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .78 RPM | 9 .14 RPM |
SRP012922_cerebellum | 2 .34 RPM | 24 .06 RPM |
SRP012922_heart | 0 .70 RPM | 12 .99 RPM |
SRP012922_kidney | 0 .27 RPM | 6 .02 RPM |
SRP012922_liver | 3 .56 RPM | 15 .17 RPM |
SRP012922_lung | 1 .53 RPM | 26 .73 RPM |
SRP012922_quadricep_muscle | 1 .21 RPM | 8 .83 RPM |
SRP012922_spleen | 4 .24 RPM | 34 .45 RPM |