RetrogeneDB ID: | retro_ocun_1082 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:6351709..6352067(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HPRT | ||
Ensembl ID: | ENSOCUG00000003186 | ||
Aliases: | HPRT1, HPRT | ||
Description: | hypoxanthine phosphoribosyltransferase 1 (HPRT1), mRNA [Source:RefSeq mRNA;Acc:NM_001105671] |
Percent Identity: | 59.2 % |
Parental protein coverage: | 56.88 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVKQYNPKMVKVASLL |
MT.DFI...S.CND.ST.DIKVI.G....T.TGKNVL...D.ID..KTMQT..SLVK..NP.MV.VA..L | |
Retrocopy | MTADFIS-ESSCNDESTRDIKVIYGGEFTTPTGKNVLTRKDMIDSVKTMQT*RSLVKS-NPSMVYVAHWL |
Parental | VKRTPRSVGYRPDFVGFEIPDKFVVGYALDYNE-YFRDLNHVCVISETGKAKYKA |
...T....GYRPD.V...IPD.FV.G.ALD.N..YF.DLNHV..IS.TG.A..KA | |
Retrocopy | *IKT---AGYRPDWVEH*IPDHFVIGDALDLNL>YFKDLNHV*IISKTGIARHKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 67 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .91 RPM |
SRP017611_liver | 0 .00 RPM | 10 .17 RPM |