RetrogeneDB ID: | retro_fcat_1608 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:7028412..7029048(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HPRT1 | ||
Ensembl ID: | ENSFCAG00000004575 | ||
Aliases: | None | ||
Description: | Hypoxanthine phosphoribosyltransferase 1 [Source:UniProtKB/TrEMBL;Acc:Q001C4] |
Percent Identity: | 91.08 % |
Parental protein coverage: | 99.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PTLRISDDEPGYDLDLFCIPHHYAEDLEKVFIPHGLIMDRTERLARDVLKEMGGHHIVALCVLKGGYKFF |
P....SDDEPGY.LDLFCIPHHYAEDLEK.FIPHGLIMDRT.RLA.DVLK.MGGHH.VALCVLKGGYKFF | |
Retrocopy | PQRLVSDDEPGYGLDLFCIPHHYAEDLEKAFIPHGLIMDRT*RLA*DVLK-MGGHHMVALCVLKGGYKFF |
Parental | ADLLDYIKALNRNSDGSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQT |
ADLLDYIKALNRNSDGSIPMTVDFIRLKSYCNDQSTG.IK..GGDDLSTLTGKNVLIVEDIIDTGKTMQT | |
Retrocopy | ADLLDYIKALNRNSDGSIPMTVDFIRLKSYCNDQSTGNIKETGGDDLSTLTGKNVLIVEDIIDTGKTMQT |
Parental | LLSMVKQHNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAK |
LLSMVKQHNPKMVKVA.LLVKRTPRSVGYKPD.V.FEIPDKFVVGYAL.YNEYF.DLNHVCVISETGK.K | |
Retrocopy | LLSMVKQHNPKMVKVARLLVKRTPRSVGYKPDLVRFEIPDKFVVGYALAYNEYFSDLNHVCVISETGKVK |
Parental | YKA |
YKA | |
Retrocopy | YKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .03 RPM | 57 .85 RPM |
SRP017611_kidney | 0 .52 RPM | 22 .88 RPM |
SRP017611_liver | 0 .30 RPM | 12 .33 RPM |