RetrogeneDB ID: | retro_pabe_791 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:89934811..89935394(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HPRT1 | ||
Ensembl ID: | ENSPPYG00000020733 | ||
Aliases: | None | ||
Description: | hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:5157] |
Percent Identity: | 71.29 % |
Parental protein coverage: | 89.45 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERV-FIPHGLIMDRTERLARDVMKEMG-GHHIVALCVL |
..T.SP...ISDDEPGYDLDL..IP.HY.EDL..V.FIPHGLI..RT.RLA.DVMKE.G...HIVA.C.. | |
Retrocopy | IVTHSPSIMISDDEPGYDLDLHHIPHHYTEDLQKV<FIPHGLIVNRTKRLA*DVMKEIG<SSHIVAFCLI |
Parental | KGGYKFFADLLDYIKA-LNRNSDRSIPMTVDFIRLK-SYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDI |
KGG..FFADLLD.IK..LNRNS.R.IPM....I..K.SYCNDQSTGDIKVIGGDDLSTLT.KNVLI.ED. | |
Retrocopy | KGGCMFFADLLDNIKV>LNRNSHRAIPM-IEPIKSK>SYCNDQSTGDIKVIGGDDLSTLTRKNVLIFEDV |
Parental | IDTGKTMQTLLS-LVRQYNPKMVKV-ASLLVKR-TPRSVGYKPDFVGFEIPDKFVVGYALDY |
IDTGKTMQTL.S..V..YN.KMVKV.ASLLV...TP.SV...PDFVGFEIPDK.V.GYAL.Y | |
Retrocopy | IDTGKTMQTLPS<WVK*YNLKMVKV>ASLLVRK>TP*SVRNRPDFVGFEIPDKLVAGYALFY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 31 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 43 .53 RPM |
SRP007412_heart | 0 .00 RPM | 9 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .77 RPM |
SRP007412_liver | 0 .00 RPM | 8 .38 RPM |
Species | RetrogeneDB ID |
---|---|
Macaca mulatta | retro_mmul_1118 |