RetrogeneDB ID: | retro_dnov_2670 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_96859:9433..9743(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL30 | ||
Ensembl ID: | ENSDNOG00000013828 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:HGNC Symbol;Acc:10333] |
Percent Identity: | 57.55 % |
Parental protein coverage: | 90.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILAN-NCPALRKSEIEYYAMLAKTGVHH-YSGNNI |
.SI.SRL....K.GK.VLG.KQ.L...RQG.A.L.ILA...CPA.R.S.....A.L.KTGV.H...G.N. | |
Retrocopy | KSISSRLRVTVKNGKHVLGSKQALQRVRQGRAELAILAS<RCPAFRNSKTDPSAVLVKTGVRH<LQGCNT |
Parental | ELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK |
..GTACGKYYR.CTLAI.DP....I.RS.PEQTG.K | |
Retrocopy | G*GTACGKYYRACTLAIPDPR*VGILRSLPEQTGKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 222 .47 RPM |
SRP012922_cerebellum | 0 .14 RPM | 134 .99 RPM |
SRP012922_heart | 0 .00 RPM | 171 .24 RPM |
SRP012922_kidney | 0 .27 RPM | 308 .57 RPM |
SRP012922_liver | 0 .15 RPM | 175 .86 RPM |
SRP012922_lung | 0 .31 RPM | 422 .89 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 214 .97 RPM |
SRP012922_spleen | 0 .34 RPM | 422 .02 RPM |