RetrogeneDB ID: | retro_eeur_355 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_268592:1192..1455(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL30 | ||
Ensembl ID: | ENSEEUG00000000964 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:HGNC Symbol;Acc:10333] |
Percent Identity: | 97.75 % |
Parental protein coverage: | 76.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAK-TGVHHYSGNNIELGTACGKYYRVCTLAI |
V.GYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAK.TGVHHYSGNNIELGTACGKYYRVCTLAI | |
Retrocopy | VRGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAK<TGVHHYSGNNIELGTACGKYYRVCTLAI |
Parental | IDPGDSDIIRSMPEQTGEK |
IDPGDSDIIRSMPEQTGEK | |
Retrocopy | IDPGDSDIIRSMPEQTGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 12 .25 RPM | 22 .40 RPM |
SRP017611_kidney | 23 .07 RPM | 52 .51 RPM |
SRP017611_liver | 20 .26 RPM | 30 .39 RPM |