RetrogeneDB ID: | retro_dord_49 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_1342:28158..28503(-) | ||
Located in intron of: | ENSDORG00000002790 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl30 | ||
Ensembl ID: | ENSDORG00000012383 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:98037] |
Percent Identity: | 88.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVAAKKT-KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKGKLVILANNCPALRKSEIEYYAMLAKT |
MVAAKK..KKSLESINSRLQLVMK.GKYVLGYK.TLKMI.QGKG.LVILANNCPAL.KSEI.Y.AMLAKT | |
Retrocopy | MVAAKKM>KKSLESINSRLQLVMKRGKYVLGYKYTLKMIGQGKGELVILANNCPALKKSEIKY*AMLAKT |
Parental | GVHHYSGNNIELGTACGKYYRVCTLAIID-PGDSDIIRSMPEQTGEK |
GVHHYSGN.IELGTA.GKYYRVCTLAIID..GDSDIIRSMPE.TGEK | |
Retrocopy | GVHHYSGNKIELGTAYGKYYRVCTLAIID<SGDSDIIRSMPEKTGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |