RetrogeneDB ID: | retro_ecab_508 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 2:115823824..115824163(+) | ||
Located in intron of: | ENSECAG00000010741 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL30 | ||
Ensembl ID: | ENSECAG00000021705 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:HGNC Symbol;Acc:10333] |
Percent Identity: | 73.5 % |
Parental protein coverage: | 99.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | VAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGK-AKLVILANNCPALRKSEIEYYAMLAK-T |
VA.KK.KKSLE.INSRLQL.MKS.K..L.YKQTLK.IRQGK.AK.VILANN.PALRK...E.YAM.AK.T | |
Retrocopy | VASKKSKKSLELINSRLQLIMKSRKCMLRYKQTLKTIRQGK<AKPVILANNRPALRKCATEHYAMVAK<T |
Parental | GVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRS-MPEQTGEK |
GVHHYS..N.ELGT.CGK.YRVCT...IDPG.SDI..S..PEQTGEK | |
Retrocopy | GVHHYSDINTELGTVCGKSYRVCTPVVIDPGGSDIFQS<LPEQTGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 441 .01 RPM |
SRP021940_cerebellum | 0 .00 RPM | 187 .32 RPM |
SRP021940_embryo | 0 .00 RPM | 351 .01 RPM |
SRP021940_placental_villous | 0 .00 RPM | 162 .81 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 254 .45 RPM |
SRP021940_testis | 0 .06 RPM | 157 .81 RPM |