RetrogeneDB ID: | retro_eeur_237 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_217986:4671..5021(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL30 | ||
Ensembl ID: | ENSEEUG00000000964 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:HGNC Symbol;Acc:10333] |
Percent Identity: | 81.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVAAKKTKKSL---ESINSRL-QLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAML |
MVA..K..K.....ESINSRL.QLVMKS.K..LGYKQ.LKMIRQGKAKLVILANNCP.LRKSEIEYYAML | |
Retrocopy | MVAGRKEDKKVTGVESINSRL<QLVMKSRKNTLGYKQILKMIRQGKAKLVILANNCPTLRKSEIEYYAML |
Parental | AKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK |
AKT.V.HYS.NNIELGTACGK.Y.VCTLAI.DPGDSDIIRS.PEQTGEK | |
Retrocopy | AKTRVYHYSDNNIELGTACGK-YKVCTLAITDPGDSDIIRSVPEQTGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 52 .51 RPM |
SRP017611_liver | 0 .00 RPM | 30 .39 RPM |