RetrogeneDB ID: | retro_eeur_187 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_200537:793..1000(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UFM1 | ||
Ensembl ID: | ENSEEUG00000008471 | ||
Aliases: | None | ||
Description: | ubiquitin-fold modifier 1 [Source:HGNC Symbol;Acc:20597] |
Percent Identity: | 86.96 % |
Parental protein coverage: | 71.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | CEDRLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPSQTAGNVFLKHGSELRIIPRDRVGSC |
C....SVP.STPFTAVLKF.AEEFKVPAATSAIITNDGI.INPSQTAGNVFLKHG.ELRIIPRD.VGSC | |
Retrocopy | CPTKYSVP*STPFTAVLKFSAEEFKVPAATSAIITNDGIEINPSQTAGNVFLKHGFELRIIPRDPVGSC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 12 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .19 RPM |
SRP017611_liver | 0 .00 RPM | 23 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006026 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017903 | 4 retrocopies | |
Equus caballus | ENSECAG00000014564 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008471 | 1 retrocopy |
retro_eeur_187 ,
|
Homo sapiens | ENSG00000120686 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000026214 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001660 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000008048 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014990 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027746 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002556 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007023 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000005293 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000040645 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000038176 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000021299 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016449 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011105 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015482 | 2 retrocopies |