RetrogeneDB ID: | retro_sscr_584 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 17:41120891..41121070(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UFM1 | ||
Ensembl ID: | ENSSSCG00000021299 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.49 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LSVPESTPFTAVLKFAAEEFKVPAA-TSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRD |
LS.PESTPF.....FAA.EFKVPAA...A.ITN.GIGIN.AQT.GN.F.K.GSEL.IIPRD | |
Retrocopy | LSTPESTPFLTAFMFAAAEFKVPAA<SNALITNGGIGINSAQTSGNAFPKPGSEL*IIPRD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 1 .99 RPM |
SRP014902_testis | 0 .00 RPM | 2 .69 RPM |
SRP018288_heart | 0 .24 RPM | 4 .56 RPM |
SRP018288_kidney | 0 .10 RPM | 13 .40 RPM |
SRP018288_liver | 0 .00 RPM | 8 .64 RPM |
SRP018288_lung | 0 .20 RPM | 3 .56 RPM |
SRP018856_adipose | 0 .00 RPM | 4 .04 RPM |
SRP035408_brain | 0 .00 RPM | 2 .03 RPM |
SRP035408_liver | 0 .00 RPM | 4 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006026 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017903 | 4 retrocopies | |
Equus caballus | ENSECAG00000014564 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008471 | 1 retrocopy | |
Homo sapiens | ENSG00000120686 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000026214 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001660 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000008048 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014990 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027746 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002556 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007023 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000005293 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000040645 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000038176 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000021299 | 1 retrocopy |
retro_sscr_584 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000016449 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011105 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015482 | 2 retrocopies |