RetrogeneDB ID:

retro_nleu_305

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397263.1:15223165..15223410(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UFM1
Ensembl ID:ENSNLEG00000002556
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_305
TCAAAGCTTTCCTTTAAGATCACTCTGACGTCCGACCTGTGGCTGCTGTACAAAGTACTCAGTGTTCCTGAAAGTACACC
TTTCACAGCAGTCTTAAAGATTGTAGCAGAATAATTTAAAGTCGTGCTGCAACAAGTGCAATTACTGCCAGTGATGGAAT
ATAAATAAATTCTGCACAGACTGCTGGAAATGTTTTTCTAAAACATGTTTCAGAACTACCAAGTATGCCTAGAGATTATA
TTGGA

ORF - retro_nleu_305 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.9 %
Parental protein coverage: 97.62 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKV-PAATSAIITNDGIGINPAQTAGNVFLKH
SK.SFKITLTSD..L.YKVLSVPESTPFTAVLK..AE.FKV..AATSAI...DGI.IN.AQTAGNVFLKH
RetrocopySKLSFKITLTSDLWLLYKVLSVPESTPFTAVLKIVAE*FKV<RAATSAITASDGI*INSAQTAGNVFLKH
ParentalGSELRIIPRDRVG
.SEL...PRD..G
RetrocopyVSELPSMPRDYIG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_305 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 49 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000060261 retrocopy
Callithrix jacchus ENSCJAG000000179034 retrocopies
Equus caballus ENSECAG000000145643 retrocopies
Erinaceus europaeus ENSEEUG000000084711 retrocopy
Homo sapiens ENSG000001206864 retrocopies
Gorilla gorilla ENSGGOG000000262143 retrocopies
Macropus eugenii ENSMEUG000000016602 retrocopies
Microcebus murinus ENSMICG000000080481 retrocopy
Macaca mulatta ENSMMUG000000149903 retrocopies
Mus musculus ENSMUSG000000277462 retrocopies
Nomascus leucogenys ENSNLEG00000002556 3 retrocopies
retro_nleu_2973, retro_nleu_305 , retro_nleu_567,
Otolemur garnettii ENSOGAG000000070236 retrocopies
Pongo abelii ENSPPYG000000052934 retrocopies
Pan troglodytes ENSPTRG000000406454 retrocopies
Rattus norvegicus ENSRNOG000000381762 retrocopies
Sus scrofa ENSSSCG000000212991 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000164492 retrocopies
Tarsius syrichta ENSTSYG000000111051 retrocopy
Tursiops truncatus ENSTTRG000000154822 retrocopies



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