Parental gene: | UFM1, ENSPPYG00000005293 |
| Aliases: | None |
| Description: | ubiquitin-fold modifier 1 precursor [Source:RefSeq peptide;Acc:NP_001125310] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 13:38207789..38218955(+) |
>ENSPPYG00000005293
ATGTCGAAGGTTTCCTTTAAGATCACGCTGACGTCGGACCCACGGCTGCCGTACAAAGTACTCAGTCGTGAAAGTACACC
TTTCACAGCAGTCTTAAAGTTTGCAGCAGAAGAATTTAAAGTTCCTGCTGCAACAAGTGCAATTATTACCAATGATGGAA
TAGGAATAAATCCTGCACAGACTGCTGGAAATGTTTTTCTAAAACATGGTTCAGAACTGCGGATTATTCCTAGAGATCGT
GTTGGAAGTTGTTAA
ATGTCGAAGGTTTCCTTTAAGATCACGCTGACGTCGGACCCACGGCTGCCGTACAAAGTACTCAGTCGTGAAAGTACACC
TTTCACAGCAGTCTTAAAGTTTGCAGCAGAAGAATTTAAAGTTCCTGCTGCAACAAGTGCAATTATTACCAATGATGGAA
TAGGAATAAATCCTGCACAGACTGCTGGAAATGTTTTTCTAAAACATGGTTCAGAACTGCGGATTATTCCTAGAGATCGT
GTTGGAAGTTGTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 1 .11 RPM |
| SRP007412_cerebellum | 1 .95 RPM |
| SRP007412_heart | 1 .29 RPM |
| SRP007412_kidney | 2 .88 RPM |
| SRP007412_liver | 4 .07 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000006026 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017903 | ortholog_one2one | 4 retrogenes | |
| Equus caballus | ENSECAG00000014564 | ortholog_one2one | 3 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000008471 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000120686 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026214 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000001660 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000008048 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000014990 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000027746 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000002556 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007023 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000040645 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000038176 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000021299 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000016449 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011105 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015482 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1492 | 82.61 | 82.14 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2061 | 77.38 | 97.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3354 | 83.54 | 92.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_3710 | 61.76 | 79.76 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000005293 retrocopies