Parental gene:

Ufm1, ENSRNOG00000038176

Aliases:Ufm1, RGD1304890
Description:Ubiquitin-fold modifier 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5BJP3]
Organism:Rat (Rattus norvegicus)
Coordinates:2:162779818..162787960(-)


>ENSRNOG00000038176
ATGTCGAAGGTGTCCTTTAAAATCACGCTGACGTCGGACCCGCGGCTACCGTACAAAGTCCTCAGCGTTCCTGAAAGCAC
ACCTTTCACAGCTGTGCTAAAGTTTGCAGCAGAAGAGTTTAAAGTTCCTGCTGCTACAAGTGCGATTATTACTAATGATG
GAATAGGAATTAATCCTGCACAGACTGCTGGAAACGTTTTTCTGAAGCACGGCTCAGAGCTGCGGCTCATTCCTCGAGAC
CGAGTTGGGAGCTGCTAA

Library Parental gene expression (RPM)
SRP017611_liver 25 .62 RPM
SRP017611_kidney 38 .59 RPM
SRP017611_brain 19 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006026 ortholog_one2one 1 retrogene
retro_cfam_1785,
Callithrix jacchus ENSCJAG00000017903 ortholog_one2one 4 retrogenes
retro_cjac_1489, retro_cjac_2545, retro_cjac_2807, retro_cjac_2872,
Equus caballus ENSECAG00000014564 ortholog_one2one 3 retrogenes
retro_ecab_293, retro_ecab_353, retro_ecab_392,
Erinaceus europaeus ENSEEUG00000008471 ortholog_one2one 1 retrogene
retro_eeur_187,
Homo sapiens ENSG00000120686 ortholog_one2one 4 retrogenes
retro_hsap_1825, retro_hsap_2177, retro_hsap_4098, retro_hsap_4767,
Gorilla gorilla ENSGGOG00000026214 ortholog_one2one 3 retrogenes
retro_ggor_2168, retro_ggor_2750, retro_ggor_2970,
Macropus eugenii ENSMEUG00000001660 ortholog_one2one 2 retrogenes
retro_meug_1215, retro_meug_1615,
Microcebus murinus ENSMICG00000008048 ortholog_one2one 1 retrogene
retro_mmur_1161,
Macaca mulatta ENSMMUG00000014990 ortholog_one2one 3 retrogenes
retro_mmul_1253, retro_mmul_2542, retro_mmul_908,
Mus musculus ENSMUSG00000027746 ortholog_one2one 2 retrogenes
retro_mmus_2246, retro_mmus_2311,
Nomascus leucogenys ENSNLEG00000002556 ortholog_one2one 3 retrogenes
retro_nleu_2973, retro_nleu_305, retro_nleu_567,
Otolemur garnettii ENSOGAG00000007023 ortholog_one2one 6 retrogenes
retro_ogar_2303, retro_ogar_2304, retro_ogar_2534, retro_ogar_2571, retro_ogar_617, retro_ogar_948,
Pongo abelii ENSPPYG00000005293 ortholog_one2one 4 retrogenes
retro_pabe_1492, retro_pabe_2061, retro_pabe_3354, retro_pabe_3710,
Pan troglodytes ENSPTRG00000040645 ortholog_one2one 4 retrogenes
retro_ptro_1169, retro_ptro_1660, retro_ptro_2779, retro_ptro_3174,
Sus scrofa ENSSSCG00000021299 ortholog_one2one 1 retrogene
retro_sscr_584,
Ictidomys tridecemlineatus ENSSTOG00000016449 ortholog_one2one 2 retrogenes
retro_itri_1685, retro_itri_1746,
Tarsius syrichta ENSTSYG00000011105 ortholog_one2one 1 retrogene
retro_tsyr_1979,
Tursiops truncatus ENSTTRG00000015482 ortholog_one2one 2 retrogenes
retro_ttru_1434, retro_ttru_518,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2201 70.59 58.82
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2. retro_rnor_2202 70.59 58.82
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Download FASTA sequences of all ENSRNOG00000038176 retrocopies