RetrogeneDB ID: | retro_eeur_38 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_2397:97916..98295(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSEEUG00000000040 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 85.04 % |
Parental protein coverage: | 85.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT |
ADQLT.EQIA.FKEAFSLFDKDGD.TI.TKEL.TVMRSLGQNPTEAEL.DMINEVDADGNGTIDFPEF.T | |
Retrocopy | ADQLTKEQIAKFKEAFSLFDKDGD*TIATKELRTVMRSLGQNPTEAEL*DMINEVDADGNGTIDFPEFMT |
Parental | MMARKMKDTDSEEEIREAFR-VFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR |
MM.RKMK.TDSEEEIREAF..VFDKDGNGY.SAAELRH.MTNLGE.L.....DEMIR | |
Retrocopy | MMGRKMKGTDSEEEIREAFL>VFDKDGNGYNSAAELRHMMTNLGEELQMKRLDEMIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 33 .52 RPM | 484 .56 RPM |
SRP017611_kidney | 11 .81 RPM | 169 .91 RPM |
SRP017611_liver | 2 .25 RPM | 26 .21 RPM |