RetrogeneDB ID: | retro_pabe_1068 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:100964315..100964740(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM1 | ||
Ensembl ID: | ENSPPYG00000012430 | ||
Aliases: | None | ||
Description: | calmodulin [Source:RefSeq peptide;Acc:NP_001126243] |
Percent Identity: | 82.52 % |
Parental protein coverage: | 95.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MADQ.T.EQI.EFK.A..LFDKDGDGTITTKE.GT.MRSL.Q.PTEAELQDMI.EVDAD.NG...FPEF. | |
Retrocopy | MADQVTGEQIVEFK*AYLLFDKDGDGTITTKEVGTEMRSLRQHPTEAELQDMIYEVDADSNGRVGFPEFV |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDG-NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY |
TM.ARKMKD..SEEE.REAFRVFDKD..NGYISAAEL.H.MTNLGEKLTDEEVDE.IREADIDGDGQVNY | |
Retrocopy | TMRARKMKDAGSEEEMREAFRVFDKDA<NGYISAAELHHAMTNLGEKLTDEEVDEIIREADIDGDGQVNY |
Parental | EEF |
EEF | |
Retrocopy | EEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 591 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 604 .11 RPM |
SRP007412_heart | 0 .00 RPM | 141 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 180 .72 RPM |
SRP007412_liver | 0 .00 RPM | 153 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1290 |
Pan troglodytes | retro_ptro_881 |