RetrogeneDB ID: | retro_pabe_115 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:84558161..84558608(+) | ||
Located in intron of: | ENSPPYG00000018704 | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000018706 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM1 | ||
Ensembl ID: | ENSPPYG00000012430 | ||
Aliases: | None | ||
Description: | calmodulin [Source:RefSeq peptide;Acc:NP_001126243] |
Percent Identity: | 93.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELG.V.RSL.QNPTEAELQD.IN.VDADGNGTIDFPEFL | |
Retrocopy | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGAVLRSLVQNPTEAELQDVINGVDADGNGTIDFPEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
T.MARKMKDTDSEEEIREAF.VFDKDGNGYISAAEL.HVMTNLGEKLTDEEVDEMIREADIDG.GQVNYE | |
Retrocopy | TKMARKMKDTDSEEEIREAFHVFDKDGNGYISAAELCHVMTNLGEKLTDEEVDEMIREADIDGNGQVNYE |
Parental | EFVQMMTAK |
EF.QMMTAK | |
Retrocopy | EFAQMMTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 4 .04 RPM | 591 .44 RPM |
SRP007412_cerebellum | 0 .73 RPM | 604 .11 RPM |
SRP007412_heart | 0 .78 RPM | 141 .85 RPM |
SRP007412_kidney | 0 .53 RPM | 180 .72 RPM |
SRP007412_liver | 0 .40 RPM | 153 .53 RPM |